Moved usb descriptors and funcs into single file
diff --git a/sam3s_example/simtrace/usb.c b/sam3s_example/simtrace/usb.c
new file mode 100644
index 0000000..f9c53b0
--- /dev/null
+++ b/sam3s_example/simtrace/usb.c
@@ -0,0 +1,472 @@
+/* ----------------------------------------------------------------------------
+ *         ATMEL Microcontroller Software Support
+ * ----------------------------------------------------------------------------
+ * Copyright (c) 2009, Atmel Corporation
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright notice,
+ * this list of conditions and the disclaimer below.
+ *
+ * Atmel's name may not be used to endorse or promote products derived from
+ * this software without specific prior written permission.
+ *
+ * DISCLAIMER: THIS SOFTWARE IS PROVIDED BY ATMEL "AS IS" AND ANY EXPRESS OR
+ * IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+ * MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT ARE
+ * DISCLAIMED. IN NO EVENT SHALL ATMEL BE LIABLE FOR ANY DIRECT, INDIRECT,
+ * INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
+ * OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+ * LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+ * NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
+ * EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ * ----------------------------------------------------------------------------
+ */
+
+/*----------------------------------------------------------------------------
+ *         Headers
+ *----------------------------------------------------------------------------*/
+
+#include "board.h"
+
+/*------------------------------------------------------------------------------
+ *       USB String descriptors 
+ *------------------------------------------------------------------------------*/
+
+const unsigned char productStringDescriptor[] = {
+
+    USBStringDescriptor_LENGTH(8),
+    USBGenericDescriptor_STRING,
+    USBStringDescriptor_UNICODE('S'),
+    USBStringDescriptor_UNICODE('I'),
+    USBStringDescriptor_UNICODE('M'),
+    USBStringDescriptor_UNICODE('t'),
+    USBStringDescriptor_UNICODE('r'),
+    USBStringDescriptor_UNICODE('a'),
+    USBStringDescriptor_UNICODE('c'),
+    USBStringDescriptor_UNICODE('e'),
+};
+
+const unsigned char snifferConfigStringDescriptor[] = {
+
+    USBStringDescriptor_LENGTH(15),
+    USBGenericDescriptor_STRING,
+    USBStringDescriptor_UNICODE('S'),
+    USBStringDescriptor_UNICODE('I'),
+    USBStringDescriptor_UNICODE('M'),
+    USBStringDescriptor_UNICODE('t'),
+    USBStringDescriptor_UNICODE('r'),
+    USBStringDescriptor_UNICODE('a'),
+    USBStringDescriptor_UNICODE('c'),
+    USBStringDescriptor_UNICODE('e'),
+    USBStringDescriptor_UNICODE('S'),
+    USBStringDescriptor_UNICODE('n'),
+    USBStringDescriptor_UNICODE('i'),
+    USBStringDescriptor_UNICODE('f'),
+    USBStringDescriptor_UNICODE('f'),
+    USBStringDescriptor_UNICODE('e'),
+    USBStringDescriptor_UNICODE('r'),
+};
+
+const unsigned char CCIDConfigStringDescriptor[] = {
+
+    USBStringDescriptor_LENGTH(12),
+    USBGenericDescriptor_STRING,
+    USBStringDescriptor_UNICODE('S'),
+    USBStringDescriptor_UNICODE('I'),
+    USBStringDescriptor_UNICODE('M'),
+    USBStringDescriptor_UNICODE('t'),
+    USBStringDescriptor_UNICODE('r'),
+    USBStringDescriptor_UNICODE('a'),
+    USBStringDescriptor_UNICODE('c'),
+    USBStringDescriptor_UNICODE('e'),
+    USBStringDescriptor_UNICODE('C'),
+    USBStringDescriptor_UNICODE('C'),
+    USBStringDescriptor_UNICODE('I'),
+    USBStringDescriptor_UNICODE('D'),
+};
+
+const unsigned char phoneConfigStringDescriptor[] = {
+
+    USBStringDescriptor_LENGTH(13),
+    USBGenericDescriptor_STRING,
+    USBStringDescriptor_UNICODE('S'),
+    USBStringDescriptor_UNICODE('I'),
+    USBStringDescriptor_UNICODE('M'),
+    USBStringDescriptor_UNICODE('t'),
+    USBStringDescriptor_UNICODE('r'),
+    USBStringDescriptor_UNICODE('a'),
+    USBStringDescriptor_UNICODE('c'),
+    USBStringDescriptor_UNICODE('e'),
+    USBStringDescriptor_UNICODE('P'),
+    USBStringDescriptor_UNICODE('h'),
+    USBStringDescriptor_UNICODE('o'),
+    USBStringDescriptor_UNICODE('n'),
+    USBStringDescriptor_UNICODE('e'),
+};
+
+
+const unsigned char MITMConfigStringDescriptor[] = {
+
+    USBStringDescriptor_LENGTH(12),
+    USBGenericDescriptor_STRING,
+    USBStringDescriptor_UNICODE('S'),
+    USBStringDescriptor_UNICODE('I'),
+    USBStringDescriptor_UNICODE('M'),
+    USBStringDescriptor_UNICODE('t'),
+    USBStringDescriptor_UNICODE('r'),
+    USBStringDescriptor_UNICODE('a'),
+    USBStringDescriptor_UNICODE('c'),
+    USBStringDescriptor_UNICODE('e'),
+    USBStringDescriptor_UNICODE('M'),
+    USBStringDescriptor_UNICODE('I'),
+    USBStringDescriptor_UNICODE('T'),
+    USBStringDescriptor_UNICODE('M'),
+};
+
+enum strDescNum {
+    NONE = 1, PRODUCT_STRING, SNIFFER_CONF_STR, CCID_CONF_STR, PHONE_CONF_STR, MITM_CONF_STR, STRING_DESC_CNT
+};
+
+/** List of string descriptors used by the device */
+const unsigned char *stringDescriptors[] = {
+/* FIXME: Is it true that I can't use the string desc #0, 
+ * because 0 also stands for "no string desc"? 
+ * on the other hand, dmesg output: 
+ * "string descriptor 0 malformed (err = -61), defaulting to 0x0409" */
+    0,
+    productStringDescriptor,
+    snifferConfigStringDescriptor,
+    CCIDConfigStringDescriptor,
+    phoneConfigStringDescriptor,
+    MITMConfigStringDescriptor
+};
+
+/* Endpoint numbers */
+#define DATAOUT     1
+#define DATAIN      2
+
+/*------------------------------------------------------------------------------
+ *       USB Device descriptors 
+ *------------------------------------------------------------------------------*/
+
+typedef struct _SIMTraceDriverConfigurationDescriptorSniffer {
+
+    /** Standard configuration descriptor. */
+    USBConfigurationDescriptor configuration;
+    USBInterfaceDescriptor sniffer;
+    USBEndpointDescriptor sniffer_dataOut;
+    USBEndpointDescriptor sniffer_dataIn;
+
+} __attribute__ ((packed)) SIMTraceDriverConfigurationDescriptorSniffer;
+
+const SIMTraceDriverConfigurationDescriptorSniffer configurationDescriptorSniffer = {
+    /* Standard configuration descriptor */
+    {
+        sizeof(USBConfigurationDescriptor),
+        USBGenericDescriptor_CONFIGURATION,
+        sizeof(SIMTraceDriverConfigurationDescriptorSniffer),
+        1, /* There is one interface in this configuration */
+        0, /* This is configuration #0 */
+        SNIFFER_CONF_STR, /* string descriptor for this configuration */
+        USBD_BMATTRIBUTES,
+        USBConfigurationDescriptor_POWER(100)
+    },
+    /* Communication class interface standard descriptor */
+    {
+        sizeof(USBInterfaceDescriptor),
+        USBGenericDescriptor_INTERFACE,
+        0, /* This is interface #0 */
+        0, /* This is alternate setting #0 for this interface */
+        2, /* This interface uses 2 endpoints */
+        0xff, /* Descriptor Class: Vendor specific */
+        0, /* No subclass */
+        0, /* No l */
+        SNIFFER_CONF_STR  /* Third in string descriptor for this interface */
+    },
+    /* Bulk-OUT endpoint standard descriptor */
+    {
+        sizeof(USBEndpointDescriptor),
+        USBGenericDescriptor_ENDPOINT,
+        USBEndpointDescriptor_ADDRESS(USBEndpointDescriptor_OUT,
+                                      DATAOUT),
+        USBEndpointDescriptor_BULK,
+        MIN(BOARD_USB_ENDPOINTS_MAXPACKETSIZE(DATAOUT),
+            USBEndpointDescriptor_MAXBULKSIZE_FS),
+        0 /* Must be 0 for full-speed bulk endpoints */
+    },
+    /* Bulk-IN endpoint descriptor */
+    {
+        sizeof(USBEndpointDescriptor),
+        USBGenericDescriptor_ENDPOINT,
+        USBEndpointDescriptor_ADDRESS(USBEndpointDescriptor_IN,
+                                      DATAIN),
+        USBEndpointDescriptor_BULK,
+        MIN(BOARD_USB_ENDPOINTS_MAXPACKETSIZE(DATAIN),
+            USBEndpointDescriptor_MAXBULKSIZE_FS),
+        0 /* Must be 0 for full-speed bulk endpoints */
+    }
+};
+
+/* FIXME: CCID descriptor: External C file */
+typedef struct {
+
+    USBConfigurationDescriptor configuration;
+    USBInterfaceDescriptor     interface;
+    CCIDDescriptor             ccid;
+    USBEndpointDescriptor      bulkOut;
+    USBEndpointDescriptor      bulkIn;
+    USBEndpointDescriptor      interruptIn;
+} __attribute__ ((packed)) CCIDDriverConfigurationDescriptorsCCID;
+
+const CCIDDriverConfigurationDescriptorsCCID configurationDescriptorCCID = { 0 };
+
+/* SIM card emulator */
+typedef struct _SIMTraceDriverConfigurationDescriptorPhone {
+
+    /** Standard configuration descriptor. */
+    USBConfigurationDescriptor configuration;
+    USBInterfaceDescriptor sniffer;
+    USBEndpointDescriptor sniffer_dataOut;
+    USBEndpointDescriptor sniffer_dataIn;
+
+} __attribute__ ((packed)) SIMTraceDriverConfigurationDescriptorPhone;
+
+const SIMTraceDriverConfigurationDescriptorPhone configurationDescriptorPhone = {
+    /* Standard configuration descriptor */
+    {
+        sizeof(USBConfigurationDescriptor),
+        USBGenericDescriptor_CONFIGURATION,
+        sizeof(SIMTraceDriverConfigurationDescriptorSniffer),
+        1, /* There is one interface in this configuration */
+        2, /* This is configuration #2 */
+        PHONE_CONF_STR, /* string descriptor for this configuration */
+        USBD_BMATTRIBUTES,
+        USBConfigurationDescriptor_POWER(100)
+    },
+    /* Communication class interface standard descriptor */
+    {
+        sizeof(USBInterfaceDescriptor),
+        USBGenericDescriptor_INTERFACE,
+        0, /* This is interface #0 */
+        0, /* This is alternate setting #0 for this interface */
+        2, /* This interface uses 2 endpoints */
+        0xff, /* Descriptor Class: Vendor specific */
+        0, /* No subclass */
+        0, /* No l */
+        PHONE_CONF_STR  /* Third in string descriptor for this interface */
+    },
+    /* Bulk-OUT endpoint standard descriptor */
+    {
+        sizeof(USBEndpointDescriptor),
+        USBGenericDescriptor_ENDPOINT,
+        USBEndpointDescriptor_ADDRESS(USBEndpointDescriptor_OUT,
+                                      DATAOUT),
+        USBEndpointDescriptor_BULK,
+        MIN(BOARD_USB_ENDPOINTS_MAXPACKETSIZE(DATAOUT),
+            USBEndpointDescriptor_MAXBULKSIZE_FS),
+        0 /* Must be 0 for full-speed bulk endpoints */
+    },
+    /* Bulk-IN endpoint descriptor */
+    {
+        sizeof(USBEndpointDescriptor),
+        USBGenericDescriptor_ENDPOINT,
+        USBEndpointDescriptor_ADDRESS(USBEndpointDescriptor_IN,
+                                      DATAIN),
+        USBEndpointDescriptor_BULK,
+        MIN(BOARD_USB_ENDPOINTS_MAXPACKETSIZE(DATAIN),
+            USBEndpointDescriptor_MAXBULKSIZE_FS),
+        0 /* Must be 0 for full-speed bulk endpoints */
+    }
+};
+
+
+typedef struct _SIMTraceDriverConfigurationDescriptorMITM {
+
+    /** Standard configuration descriptor. */
+    USBConfigurationDescriptor configuration;
+    USBInterfaceDescriptor simcard;
+    USBEndpointDescriptor simcard_dataOut;
+    USBEndpointDescriptor simcard_dataIn;
+    USBInterfaceDescriptor phone;
+    USBEndpointDescriptor phone_dataOut;
+    USBEndpointDescriptor phone_dataIn;
+
+} __attribute__ ((packed)) SIMTraceDriverConfigurationDescriptorMITM;
+
+const SIMTraceDriverConfigurationDescriptorMITM configurationDescriptorMITM = {
+    /* Standard configuration descriptor */
+    {
+        sizeof(USBConfigurationDescriptor),
+        USBGenericDescriptor_CONFIGURATION,
+        sizeof(SIMTraceDriverConfigurationDescriptorMITM),
+        2, /* There are two interfaces in this configuration */
+        4, /* This is configuration #4 */
+        MITM_CONF_STR, /* string descriptor for this configuration */
+        USBD_BMATTRIBUTES,
+        USBConfigurationDescriptor_POWER(100)
+    },
+    /* Communication class interface standard descriptor */
+    {
+        sizeof(USBInterfaceDescriptor),
+        USBGenericDescriptor_INTERFACE,
+        0, /* This is interface #0 */
+        0, /* This is alternate setting #0 for this interface */
+        2, /* This interface uses 2 endpoints */
+        //CDCCommunicationInterfaceDescriptor_CLASS,
+        0xff,
+//        CDCCommunicationInterfaceDescriptor_ABSTRACTCONTROLMODEL,
+        0,
+//        CDCCommunicationInterfaceDescriptor_NOPROTOCOL,
+        0, 
+        MITM_CONF_STR  /* string descriptor for this interface */
+    },
+    /* Bulk-OUT endpoint standard descriptor */
+    {
+        sizeof(USBEndpointDescriptor),
+        USBGenericDescriptor_ENDPOINT,
+        USBEndpointDescriptor_ADDRESS(USBEndpointDescriptor_OUT,
+                                      DATAOUT),
+        USBEndpointDescriptor_BULK,
+        MIN(BOARD_USB_ENDPOINTS_MAXPACKETSIZE(DATAOUT),
+            USBEndpointDescriptor_MAXBULKSIZE_FS),
+        0 /* Must be 0 for full-speed bulk endpoints */
+    },
+    /* Bulk-IN endpoint descriptor */
+    {
+        sizeof(USBEndpointDescriptor),
+        USBGenericDescriptor_ENDPOINT,
+        USBEndpointDescriptor_ADDRESS(USBEndpointDescriptor_IN,
+                                      DATAIN),
+        USBEndpointDescriptor_BULK,
+        MIN(BOARD_USB_ENDPOINTS_MAXPACKETSIZE(DATAIN),
+            USBEndpointDescriptor_MAXBULKSIZE_FS),
+        0 /* Must be 0 for full-speed bulk endpoints */
+    },
+    /* Communication class interface standard descriptor */
+    {
+        sizeof(USBInterfaceDescriptor),
+        USBGenericDescriptor_INTERFACE,
+        1, /* This is interface #1 */
+        0, /* This is alternate setting #0 for this interface */
+        2, /* This interface uses 2 endpoints */
+        0xff,
+        0,
+        0, 
+        0, /* FIXME: string descriptor for this interface */
+    },
+    /* Bulk-OUT endpoint standard descriptor */
+    {
+        sizeof(USBEndpointDescriptor),
+        USBGenericDescriptor_ENDPOINT,
+        USBEndpointDescriptor_ADDRESS(USBEndpointDescriptor_OUT,
+                                      DATAOUT),
+        USBEndpointDescriptor_BULK,
+        MIN(BOARD_USB_ENDPOINTS_MAXPACKETSIZE(DATAOUT),
+            USBEndpointDescriptor_MAXBULKSIZE_FS),
+        0 /* Must be 0 for full-speed bulk endpoints */
+    },
+    /* Bulk-IN endpoint descriptor */
+    {
+        sizeof(USBEndpointDescriptor),
+        USBGenericDescriptor_ENDPOINT,
+        USBEndpointDescriptor_ADDRESS(USBEndpointDescriptor_IN,
+                                      DATAIN),
+        USBEndpointDescriptor_BULK,
+        MIN(BOARD_USB_ENDPOINTS_MAXPACKETSIZE(DATAIN),
+            USBEndpointDescriptor_MAXBULKSIZE_FS),
+        0 /* Must be 0 for full-speed bulk endpoints */
+    }
+};
+
+
+/** Standard USB device descriptor for the CDC serial driver */
+const USBDeviceDescriptor deviceDescriptor = {
+
+    sizeof(USBDeviceDescriptor),
+    USBGenericDescriptor_DEVICE,
+    USBDeviceDescriptor_USB2_00,
+    0xff,
+//    CDCDeviceDescriptor_CLASS,
+    0xff,
+//    CDCDeviceDescriptor_SUBCLASS,
+    0xff,
+//    CDCDeviceDescriptor_PROTOCOL,
+    BOARD_USB_ENDPOINTS_MAXPACKETSIZE(0),
+    ATMEL_VENDOR_ID,
+    SIMTRACE_PRODUCT_ID,
+    1, /* Release number */
+    0, /* No string descriptor for manufacturer */
+    PRODUCT_STRING, /* Index of product string descriptor */
+    0, /* No string descriptor for serial number */
+    4 /* Device has 4 possible configurations */
+};
+
+const USBConfigurationDescriptor *configurationDescriptorsArr[] = {
+    &configurationDescriptorSniffer,
+    &configurationDescriptorCCID,
+    &configurationDescriptorPhone,
+    &configurationDescriptorMITM,
+};
+
+
+/* AT91SAM3S does only support full speed, but not high speed USB */
+const USBDDriverDescriptors driverDescriptors = {
+    &deviceDescriptor,
+    (USBConfigurationDescriptor **) &(configurationDescriptorsArr),   /* first full-speed configuration descriptor */
+    0, /* No full-speed device qualifier descriptor */
+    0, /* No full-speed other speed configuration */
+    0, /* No high-speed device descriptor */
+    0, /* No high-speed configuration descriptor */
+    0, /* No high-speed device qualifier descriptor */
+    0, /* No high-speed other speed configuration descriptor */
+    stringDescriptors,
+    STRING_DESC_CNT-1 /* cnt string descriptors in list */
+};
+
+/*----------------------------------------------------------------------------
+ *        Functions 
+ *----------------------------------------------------------------------------*/
+
+/**
+ * \brief Configure 48MHz Clock for USB
+ */
+static void _ConfigureUsbClock(void)
+{
+    /* Enable PLLB for USB */
+// FIXME: are these the dividers I actually need?
+// FIXME: I could just use PLLA, since it has a frequ of 48Mhz anyways?
+    PMC->CKGR_PLLBR = CKGR_PLLBR_DIVB(5)
+                    | CKGR_PLLBR_MULB(0xc)  /* MULT+1=0xd*/
+                    | CKGR_PLLBR_PLLBCOUNT_Msk;
+    while((PMC->PMC_SR & PMC_SR_LOCKB) == 0);
+    /* USB Clock uses PLLB */
+    PMC->PMC_USB = PMC_USB_USBDIV(0)       /* /1 (no divider)  */
+                 | PMC_USB_USBS;           /* PLLB */
+}
+
+
+void SIMtrace_USB_Initialize( void )
+{
+    _ConfigureUsbClock();
+    // Get std USB driver
+    USBDDriver *pUsbd = USBD_GetDriver();
+
+    TRACE_DEBUG(".");
+
+    // Initialize standard USB driver
+    USBDDriver_Initialize(pUsbd,
+                          &driverDescriptors,
+// FIXME: 2 interface settings supported in MITM mode
+                          0); // Multiple interface settings not supported
+    
+    USBD_Init();
+    
+    USBD_Connect();
+
+    NVIC_EnableIRQ( UDP_IRQn );
+}