Implementation of TCH/F decoder supporting GSM-FR and GSM-EFR. Issue #50
diff --git a/lib/decoding/BitVector.cpp b/lib/decoding/BitVector.cpp
new file mode 100644
index 0000000..89d8d19
--- /dev/null
+++ b/lib/decoding/BitVector.cpp
@@ -0,0 +1,513 @@
+/*
+* Copyright 2008 Free Software Foundation, Inc.
+*
+* This software is distributed under the terms of the GNU Public License.
+* See the COPYING file in the main directory for details.
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+
+
+
+#include "BitVector.h"
+#include <iostream>
+
+using namespace std;
+
+
+/**
+  Apply a Galois polymonial to a binary seqeunce.
+  @param val The input sequence.
+  @param poly The polynomial.
+  @param order The order of the polynomial.
+  @return Single-bit result.
+*/
+unsigned applyPoly(uint64_t val, uint64_t poly, unsigned order)
+{
+	uint64_t prod = val & poly;
+	unsigned sum = prod;
+	for (unsigned i=1; i<order; i++) sum ^= prod>>i;
+	return sum & 0x01;
+}
+
+
+
+
+
+
+BitVector::BitVector(const char *valString)
+	:Vector<char>(strlen(valString))
+{
+	uint32_t accum = 0;
+	for (size_t i=0; i<size(); i++) {
+		accum <<= 1;
+		if (valString[i]=='1') accum |= 0x01;
+		mStart[i] = accum;
+	}
+}
+
+
+
+
+
+uint64_t BitVector::peekField(size_t readIndex, unsigned length) const
+{
+	uint64_t accum = 0;
+	char *dp = mStart + readIndex;
+	assert(dp+length <= mEnd);
+	for (unsigned i=0; i<length; i++) {
+		accum = (accum<<1) | ((*dp++) & 0x01);
+	}
+	return accum;
+}
+
+
+uint64_t BitVector::readField(size_t& readIndex, unsigned length) const
+{
+	const uint64_t retVal = peekField(readIndex,length);
+	readIndex += length;
+	return retVal;
+}
+
+
+void BitVector::fillField(size_t writeIndex, uint64_t value, unsigned length)
+{
+	char *dpBase = mStart + writeIndex;
+	char *dp = dpBase + length - 1;
+	assert(dp < mEnd);
+	while (dp>=dpBase) {
+		*dp-- = value & 0x01;
+		value >>= 1;
+	}
+}
+
+void BitVector::writeField(size_t& writeIndex, uint64_t value, unsigned length)
+{
+	fillField(writeIndex,value,length);
+	writeIndex += length;
+}
+
+
+void BitVector::invert()
+{
+	for (size_t i=0; i<size(); i++) {
+		mStart[i] = ~mStart[i];
+	}
+}
+
+
+
+
+void BitVector::reverse8()
+{
+	assert(size()>=8);
+
+	char tmp0 = mStart[0];
+	mStart[0] = mStart[7];
+	mStart[7] = tmp0;
+
+	char tmp1 = mStart[1];
+	mStart[1] = mStart[6];
+	mStart[6] = tmp1;
+
+	char tmp2 = mStart[2];
+	mStart[2] = mStart[5];
+	mStart[5] = tmp2;
+
+	char tmp3 = mStart[3];
+	mStart[3] = mStart[4];
+	mStart[4] = tmp3;
+}
+
+
+
+void BitVector::LSB8MSB()
+{
+	size_t size8 = 8*(size()/8);
+	size_t iTop = size8 - 8;
+	for (size_t i=0; i<=iTop; i+=8) segment(i,8).reverse8();
+}
+
+
+
+uint64_t BitVector::syndrome(Generator& gen) const
+{
+	gen.clear();
+	const char *dp = mStart;
+	while (dp<mEnd) gen.syndromeShift(*dp++);
+	return gen.state();
+}
+
+
+uint64_t BitVector::parity(Generator& gen) const
+{
+	gen.clear();
+	const char *dp = mStart;
+	while (dp<mEnd) gen.encoderShift(*dp++);
+	return gen.state();
+}
+
+
+void BitVector::encode(const ViterbiR2O4& coder, BitVector& target)
+{
+	size_t sz = size();
+	assert(sz*coder.iRate() == target.size());
+
+	// Build a "history" array where each element contains the full history.
+	uint32_t history[sz];
+	uint32_t accum = 0;
+	for (size_t i=0; i<sz; i++) {
+		accum = (accum<<1) | bit(i);
+		history[i] = accum;
+	}
+
+	// Look up histories in the pre-generated state table.
+	char *op = target.begin();
+	for (size_t i=0; i<sz; i++) {
+		unsigned index = coder.cMask() & history[i];
+		for (unsigned g=0; g<coder.iRate(); g++) {
+			*op++ = coder.stateTable(g,index);
+		}
+	}
+}
+
+
+
+unsigned BitVector::sum() const
+{
+	unsigned sum = 0;
+	for (size_t i=0; i<size(); i++) sum += mStart[i] & 0x01;
+	return sum;
+}
+
+
+
+
+void BitVector::map(const unsigned *map, size_t mapSize, BitVector& dest) const
+{
+	for (unsigned i=0; i<mapSize; i++) {
+		dest.mStart[i] = mStart[map[i]];
+	}
+}
+
+
+
+
+void BitVector::unmap(const unsigned *map, size_t mapSize, BitVector& dest) const
+{
+	for (unsigned i=0; i<mapSize; i++) {
+		dest.mStart[map[i]] = mStart[i];
+	}
+}
+
+
+
+
+
+
+
+
+
+
+ostream& operator<<(ostream& os, const BitVector& hv)
+{
+	for (size_t i=0; i<hv.size(); i++) {
+		if (hv.bit(i)) os << '1';
+		else os << '0';
+	}
+	return os;
+}
+
+
+
+
+ViterbiR2O4::ViterbiR2O4()
+{
+	assert(mDeferral < 32);
+	mCoeffs[0] = 0x019;
+	mCoeffs[1] = 0x01b;
+	computeStateTables(0);
+	computeStateTables(1);
+	computeGeneratorTable();
+}
+
+
+
+
+void ViterbiR2O4::initializeStates()
+{
+	for (unsigned i=0; i<mIStates; i++) clear(mSurvivors[i]);
+	for (unsigned i=0; i<mNumCands; i++) clear(mCandidates[i]);
+}
+
+
+
+void ViterbiR2O4::computeStateTables(unsigned g)
+{
+	assert(g<mIRate);
+	for (unsigned state=0; state<mIStates; state++) {
+		// 0 input
+		uint32_t inputVal = state<<1;
+		mStateTable[g][inputVal] = applyPoly(inputVal, mCoeffs[g], mOrder+1);
+		// 1 input
+		inputVal |= 1;
+		mStateTable[g][inputVal] = applyPoly(inputVal, mCoeffs[g], mOrder+1);
+	}
+}
+
+void ViterbiR2O4::computeGeneratorTable()
+{
+	for (unsigned index=0; index<mIStates*2; index++) {
+		mGeneratorTable[index] = (mStateTable[0][index]<<1) | mStateTable[1][index];
+	}
+}
+
+
+
+
+
+
+void ViterbiR2O4::branchCandidates()
+{
+	// Branch to generate new input states.
+	const vCand *sp = mSurvivors;
+	for (unsigned i=0; i<mNumCands; i+=2) {
+		// extend and suffix
+		const uint32_t iState0 = (sp->iState) << 1;				// input state for 0
+		const uint32_t iState1 = iState0 | 0x01;				// input state for 1
+		const uint32_t oStateShifted = (sp->oState) << mIRate;	// shifted output
+		const float cost = sp->cost;
+		sp++;
+		// 0 input extension
+		mCandidates[i].cost = cost;
+		mCandidates[i].oState = oStateShifted | mGeneratorTable[iState0 & mCMask];
+		mCandidates[i].iState = iState0;
+		// 1 input extension
+		mCandidates[i+1].cost = cost;
+		mCandidates[i+1].oState = oStateShifted | mGeneratorTable[iState1 & mCMask];
+		mCandidates[i+1].iState = iState1;
+	}
+}
+
+
+void ViterbiR2O4::getSoftCostMetrics(const uint32_t inSample, const float *matchCost, const float *mismatchCost)
+{
+	const float *cTab[2] = {matchCost,mismatchCost};
+	for (unsigned i=0; i<mNumCands; i++) {
+		vCand& thisCand = mCandidates[i];
+		// We examine input bits 2 at a time for a rate 1/2 coder.
+		const unsigned mismatched = inSample ^ (thisCand.oState);
+		thisCand.cost += cTab[mismatched&0x01][1] + cTab[(mismatched>>1)&0x01][0];
+	}
+}
+
+
+void ViterbiR2O4::pruneCandidates()
+{
+	const vCand* c1 = mCandidates;					// 0-prefix
+	const vCand* c2 = mCandidates + mIStates;		// 1-prefix
+	for (unsigned i=0; i<mIStates; i++) {
+		if (c1[i].cost < c2[i].cost) mSurvivors[i] = c1[i];
+		else mSurvivors[i] = c2[i];
+	}
+}
+
+
+const ViterbiR2O4::vCand& ViterbiR2O4::minCost() const
+{
+	int minIndex = 0;
+	float minCost = mSurvivors[0].cost;
+	for (unsigned i=1; i<mIStates; i++) {
+		const float thisCost = mSurvivors[i].cost;
+		if (thisCost>=minCost) continue;
+		minCost = thisCost;
+		minIndex=i;
+	}
+	return mSurvivors[minIndex];
+}
+
+
+const ViterbiR2O4::vCand& ViterbiR2O4::step(uint32_t inSample, const float *probs, const float *iprobs)
+{
+	branchCandidates();
+	getSoftCostMetrics(inSample,probs,iprobs);
+	pruneCandidates();
+	return minCost();
+}
+
+
+uint64_t Parity::syndrome(const BitVector& receivedCodeword)
+{
+	return receivedCodeword.syndrome(*this);
+}
+
+
+void Parity::writeParityWord(const BitVector& data, BitVector& parityTarget, bool invert)
+{
+	uint64_t pWord = data.parity(*this);
+	if (invert) pWord = ~pWord; 
+	parityTarget.fillField(0,pWord,size());
+}
+
+
+
+
+
+
+
+
+
+SoftVector::SoftVector(const BitVector& source)
+{
+	resize(source.size());
+	for (size_t i=0; i<size(); i++) {
+		if (source.bit(i)) mStart[i]=1.0F;
+		else mStart[i]=0.0F;
+	}
+}
+
+
+BitVector SoftVector::sliced() const
+{
+	size_t sz = size();
+	BitVector newSig(sz);
+	for (size_t i=0; i<sz; i++) {
+		if (mStart[i]>0.5F) newSig[i]=1;
+		else newSig[i] = 0;
+	}
+	return newSig;
+}
+
+
+
+void SoftVector::decode(ViterbiR2O4 &decoder, BitVector& target) const
+{
+	const size_t sz = size();
+	const unsigned deferral = decoder.deferral();
+	const size_t ctsz = sz + deferral;
+	assert(sz <= decoder.iRate()*target.size());
+
+	// Build a "history" array where each element contains the full history.
+	uint32_t history[ctsz];
+	{
+		BitVector bits = sliced();
+		uint32_t accum = 0;
+		for (size_t i=0; i<sz; i++) {
+			accum = (accum<<1) | bits.bit(i);
+			history[i] = accum;
+		}
+		// Repeat last bit at the end.
+		for (size_t i=sz; i<ctsz; i++) {
+			accum = (accum<<1) | (accum & 0x01);
+			history[i] = accum;
+		}
+	}
+
+	// Precompute metric tables.
+	float matchCostTable[ctsz];
+	float mismatchCostTable[ctsz];
+	{
+		const float *dp = mStart;
+		for (size_t i=0; i<sz; i++) {
+			// pVal is the probability that a bit is correct.
+			// ipVal is the probability that a bit is correct.
+			float pVal = dp[i];
+			if (pVal>0.5F) pVal = 1.0F-pVal;
+			float ipVal = 1.0F-pVal;
+			// This is a cheap approximation to an ideal cost function.
+			if (pVal<0.01F) pVal = 0.01;
+			if (ipVal<0.01F) ipVal = 0.01;
+			matchCostTable[i] = 0.25F/ipVal;
+			mismatchCostTable[i] = 0.25F/pVal;
+		}
+	
+		// pad end of table with unknowns
+		for (size_t i=sz; i<ctsz; i++) {
+			matchCostTable[i] = 0.5F;
+			mismatchCostTable[i] = 0.5F;
+		}
+	}
+
+	{
+		decoder.initializeStates();
+		// Each sample of history[] carries its history.
+		// So we only have to process every iRate-th sample.
+		const unsigned step = decoder.iRate();
+		// input pointer
+		const uint32_t *ip = history + step - 1;
+		// output pointers
+		char *op = target.begin();
+		const char *const opt = target.end();
+		// table pointers
+		const float* match = matchCostTable;
+		const float* mismatch = mismatchCostTable;
+		size_t oCount = 0;
+		while (op<opt) {
+			// Viterbi algorithm
+			const ViterbiR2O4::vCand &minCost = decoder.step(*ip, match, mismatch);
+			ip += step;
+			match += step;
+			mismatch += step;
+			// output
+			if (oCount>=deferral) *op++ = (minCost.iState >> deferral);
+			oCount++;
+		}
+	}
+}
+
+
+
+
+ostream& operator<<(ostream& os, const SoftVector& sv)
+{
+	for (size_t i=0; i<sv.size(); i++) {
+		if (sv[i]<0.25) os << "0";
+		else if (sv[i]>0.75) os << "1";
+		else os << "-";
+	}
+	return os;
+}
+
+
+
+void BitVector::pack(unsigned char* targ) const
+{
+	// Assumes MSB-first packing.
+	unsigned bytes = size()/8;
+	for (unsigned i=0; i<bytes; i++) {
+		targ[i] = peekField(i*8,8);
+	}
+	unsigned whole = bytes*8;
+	unsigned rem = size() - whole;
+	if (rem==0) return;
+	targ[bytes] = peekField(whole,rem) << (8-rem);
+}
+
+
+void BitVector::unpack(const unsigned char* src)
+{
+	// Assumes MSB-first packing.
+	unsigned bytes = size()/8;
+	for (unsigned i=0; i<bytes; i++) {
+		fillField(i*8,src[i],8);
+	}
+	unsigned whole = bytes*8;
+	unsigned rem = size() - whole;
+	if (rem==0) return;
+	fillField(whole,src[bytes],rem);
+}
+
+// vim: ts=4 sw=4